Sponsors

 Logo LRI
 
U-psud
 
Microsoft research
 
ENFIN - European Network of Excellence
 
Université Evry
 
IMGT
 
SIB
 
Génopole
 
IBISC
CEA
GDR BIM

Syndication

feed image
feed image
feed image
Home arrow Program arrow Keynote speakers
Keynote speakers Print

Olivier Bodenreider

Lister Hill National Center for Biomedical Communications, National Library of Medicine, National Institutes of Health, Maryland, USA

Presentation title:

Ontologies and data integration in biomedicine: Success stories and challenging issues

abstract: 

In this presentation, we review some examples of successful biomedical data integration projects in which ontologies play an important role, including the integration of genomic data based on Gene Ontology annotations, the cancer Biomedical Informatics Grid (caBIG) project, and semantic mashups created by the Semantic Web for Health Care and Life Sciences community.

Peter Karp

In collaboration with Thomas J. Lee and Valerie Wagner, SRI International, Menlo Park, CA USA

Peter Karp Presentation title:

BioWarehouse: Relational Integration of Eleven Bioinformatics Databases and Formats

Abstract:

 BioWarehouse is an open-source project for integrating bioinformatics databases within a relational database warehouse. It has two key features. A comprehensive database schema models many different bioinformatics datatypes. A set of loader tools permits loading of public bioinformatics databases, and of standard bioinformatics formats, into that database schema. Thus, multiple databases can be queried together within a single common schema. The supported databases are BioCyc, CMR, ENZYME, Eco2DBase, Genbank, Gene Ontology, KEGG, NCBI Taxonomy, and UniProt. The supported formats are BioPAX (protein interactions subset only) and MAGE-ML.

Norman Paton

School of Computer Science, University of Manchester, UK

Norman Paton Presentation title: Data Integration in the Life Sciences: Fun, Findings and Frustrations

Abstract:

This paper concerns the research topic of data integration in the life sciences. The paper presents no technical results, but rather provides a classification of research activities in terms of the contributions they seek to make to the life sciences, bioinformatics or computer science.

 
© 2017 Data Integration in The Life Sciences 2008 (DILS 2008)
Joomla! est un logiciel libre distribué sous licence GNU/GPL.