Accepted papers

List of DILS 2008 accepted papers

(Alphabetical order)

A System for Ontology-Based Annotation of Biomedical Data
Clement Jonquet, Mark Musen, and Nigam Shah

Analyzing the Evolution of Life Science Ontologies and Mappings
Michael Hartung, Toralf Kirsten, and Erhard Rahm

An Entity Resolution Framework for Deduplicating Proteins
Lucas Lochovsky, and Thodoros Topaloglou

Automatic methods for integrating biomedical data sources in a
mediator-based system Fleur Mougin, Anita Burgun, Olivier Bodenreider,
Julie Chabalier, Olivier Loréal, and Pierre Le Beux

Bgee: Integration and Comparing Heterogeneous Transcriptome Data Among
Species Frederic Bastian, Gilles Parmentier, Julien Roux, Sebastien
Roux, Vincent Laudet, and Marc Robinson-Rechavi

Bio2RDF: Semantic web atlas of postgenomic knowledge about human and mouse
François Belleau, Jean Morisette, and Nicole Tourigny

Bringing Chemical Knowledge to the Semantic Web
Mykola Konyk, Alexander DeLeon, and Michel Dumontier

Combining One-Class Classification Models Based on Diverse Biological
Data for Prediction of Protein-Protein Interactions
Jose Reyes and David Gilbert

ENFIN – an integrative structure for Systems Biology
Florian Reisinger, Manuel Corpas, John Hancock, Henning Hermjakob, Ewan
Birney, Pascal Kahlem

Exploiting Ontology Structure and Patterns of Annotation to Mine
Significant Associations between Pairs of CV Terms
Woei-Jyh Lee, Louiqa Raschid, Hassan Sayyadi, and Padmini Srinivasan

Integrating Biological Data – The Distributed Annotation System
Andrew Jenkinson

Integrating Protein-Protein Interactions and text Mining for protein
Function Prediction Samira Jaeger, Sylvain Gaudan, Ulf Leser, Dietrich

OMIE: A tool for Ontology Mapping within an Interactive and Extensible
Amel Bouzeghoub, Abdeltif Elbyed, and Fariza Tahi

Ontology Design Principles and Normalization Techniques in the Web
Xiaoshu Wang, Jonas Almeida and Arlindo Oliveira

Semantic Representation and Querying of caBIG Data Services
Patrick Shironoshita, Ray Bradley, Reginald Jean-Mary, Thomas Taylor,
Michael Ryan, and Mansur Kabuka

Semi supervised Spectral Clustering for regulatory module discovery
Alok Mishra and Duncan Gillies

SisGen: A CORBA-based data management program for DNA sequencing projects
Georgios Pappas, Robson Miranda, Natalia Martins, Roberto Togawa, and
Marcos Costa

VisGenome and Ensembl: Usability of Integrated Genome Maps
Joanna Jakubowska, Ela Hunt, John McClure, and Matthew Chalmers